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enrichit 0.2.0

Legitimate C++ source code

Source references XOR syntaxuid_wrapper source marker

SHA-256fb2192cc3beca97e08618ac01e28a1ecc4adb93a2b3a5078da60413eb9234107

URLhttps://cran.r-project.org/src/contrib/enrichit_0.2.0.tar.gz

MaleculeO(Er)

Evidence

imports <algorithm> gsea_multilevel.cpp · lines 1–22

1/*
2 * This file is based on the fgsea package (https://github.com/ctlab/fgsea)
3 * Copyright (c) 2016-2024 Alexey Sergushichev
4 *
5 * It has been adapted for the enrichit package.
6 */
7
8#include "gsea_multilevel.h"
9#include <Rcpp.h>
10#include <algorithm>
11#include <numeric>
12#include <cmath>
13#include <iomanip>
14#include <iostream>
15#include <unordered_map>
16#include <Rmath.h> 
17
18using namespace std;
⋯4 lines

uid_wrapper source marker gsea_multilevel.cpp · lines 96–103

31… es.emplace_back(get<0>(stats[i]), get<1>(stats[i]));
  }
98
  uid_wrapper uid(0, sampleSize - startFrom - 1, rng);
100
  auto gen_new_sample = [&] {
      int ind = uid() + startFrom;
      return c …

Source references XOR syntax gsea_multilevel.cpp · lines 355–358

23… s[oldVal] + ranks[newVal];
      curHash ^= geneHashes[oldVal] ^ geneHashes[newVal];
      sampleChunks.chunkSum[oldChunkInd] -= ranks[oldVal];
      sampleChunks.chunkSum[newChunkInd] += r …

English function-word token "and" gsea_multilevel.cpp · lines 516–523

44… _names[i])] = i;
  }
  
  // Calculate ES and group by size
  struct PathwayInfo {
      int index;
      double es;
      int size;

English language detection NEWS.md · lines 3–5

3+ extend multi-omics integration with pathway-level and topology-level workflows (2026-06-24, Wed)
4    - add `aggregate_enrichment()` for multi-omics Late Fusion at the pathway level by aggregating multiple `enrichResult`/`gseaResult` objects
5    - support correlation-aware p-value aggregation with `method = "brown"` in `aggregate_omics()`

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