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ugbio-freec 1.33.0

“Ultima Genomics FREEC”

Registry package lists one maintainerRelease published within seven days

SHA-256912d5aad4a07de8b3fae0a28d843d1d78986ec2ced0cbaced679bacfca50655a

URLhttps://files.pythonhosted.org/packages/7a/1a/00734a8daee0528604239e217fcc8f10b3ecf8061b925b7ce235547c7ceb/ugbio_freec-1.33.0-py3-none-any.whl

MaleculeH(F)Md(Pa₂)

Evidence

Declares Markdown package description METADATA · lines 1–14

1Metadata-Version: 2.4
2Name: ugbio_freec
3Version: 1.33.0
4Summary: Ultima Genomics FREEC
5Author-email: Tammy Biniashvili <[email protected]>, Avigail Moldovan <[email protected]>
6License: Apache-2.0
7Requires-Python: >=3.11
8Description-Content-Type: text/markdown
9Requires-Dist: pandas<3.0.0,>=2.2.2
10Requires-Dist: pyfaidx<1.0.0,>=0.8.1
11
12# ugbio_freec
13
14A docker for running ultimagen [FREEC](https://github.com/Ultimagen/FREEC)

imports argparse generate_control_freec_config.py · lines 1–12

1import argparse
2import sys
3
4
5def run(argv):  # noqa PLR0915
6    """
7    Generate a config file for controlFREEC given a set of parameters
8    """
9
10    args = parse_args(argv)
11
12    config_text =  …

Python file opened for write or append generate_control_freec_config.py · lines 83–92

83:45… eup
84        config_text = "\n".join([config_text, s])
85
86    with open(args.sample_name + ".config.txt", "w") as text_file:
87        text_file.write(config_text)
88
⋯4 lines

No evidence locations were recorded for this file. Raw result